FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439084
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36820.8385639194322727No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17470.39787375536343844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17110.3896748685900648No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15760.35892904318991353No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14050.3199843310163887No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12710.2894662524710534No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11000.2505215402975285No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC9270.21112133441437173No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8880.2022392070765503No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7500.17081014111195125No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7100.16170026691931383No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6870.15646208925854735No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6810.15509560812965173No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6550.1491741899044374No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6400.1457579870821984No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6260.1425695311147753No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6130.13960882200216815No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6010.13687585974437694No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5830.1327764163576901No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5490.1250330232939483No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5310.12093357990726149No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5050.11501216168204717No Hit
CGCCTGCTGGAATGCCGTTTTCAGCAGGAAC4960.11296243998870376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4860.11068497144054441No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4850.11045722458572847No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)