FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487407
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15730.32272823328347766No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14980.3073406824276221No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12370.2537920054492447No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12220.25071449527807355No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11980.24579047900419979No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10920.22404274046125722No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10570.2168618833951913No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10470.21481020994774386No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8740.17931625930690367No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8540.17521291241200887No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8150.16721138596696394No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7770.15941502686666378No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7530.15449101059279002No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7310.1499773290084057No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7140.1464894841477451No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5620.11530404774654447No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5600.11489371305705498No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5110.10484051316456268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)