FastQCFastQC Report
Sun 21 May 2023
EGAF00007936130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487407
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40570.8323639176294145No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24920.5112770231038947No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19710.4043848364918846No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14740.30241666615374835No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12730.2611780298600554No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12640.2593315237573527No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12160.2494834912096051No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11570.2373786178696654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8740.17931625930690367No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8510.17459741037777463No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8410.1725457369303272No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8220.16864755738017714No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7830.16064603093513224No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7630.1565426840402374No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7280.14936182697417147No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5640.11571438243603395No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5410.1109955335069049No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5230.10730252130149956No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG4930.10114750095915734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)