FastQCFastQC Report
Sun 21 May 2023
EGAF00007936132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13730.2799207332985386No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13320.2715618475991649No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13200.26911534446764096No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11800.24057280793319413No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9490.19347762265135698No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8620.17574047494780795No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7990.1628963335073069No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7470.1522948199373695No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6860.13985842901878914No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6110.1245677844467641No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5510.11233526878914404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)