FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453574
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38850.8565305771494839No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17060.37612385189627273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13710.3022660029014009No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13030.28727396191139704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12250.27007720901109855No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC12040.2654473139994797No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10970.24185689655932657No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10740.23678605916564885No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10680.23546323201947203No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9140.20151066860093392No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8100.17858166473386922No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7810.17218800019401465No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7740.17064470185680838No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7040.1552117184847456No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6700.14771569798974368No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6540.1441881589332722No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6060.13360554176385772No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.13051894508944514No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5460.12037727030208964No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5250.1157473752904708No Hit
GCAGCAACCAAAACCACCCGCACCGCTGCTA5070.11177889385194037No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4620.10185769025561431No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4610.10163721906458482No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4580.10097580549149641No Hit

[OK]Adapter Content

Adapter graph