FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451539
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35980.7968303956025947No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18790.41613238280635784No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11110.2460474067577773No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9690.21459940337379496No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8220.18204407592699634No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8020.17761477967573122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7060.15635415766965866No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6610.14638824110431214No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5940.131550098662574No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5870.1299998449746312No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5760.1275637320364354No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5240.1160475617831461No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5210.11538316734545631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)