FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474015
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC8710.18374945940529308No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6720.14176766558020315No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6170.13016465723658532No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6090.1284769469320591No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG4870.10273936478803414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)