FastQCFastQC Report
Wed 31 May 2023
EGAF00007936140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474015
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22830.48163032815417234No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9040.19071126441146377No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC8600.18142885773656953No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7070.14915139816250542No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6060.12784405556786177No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5820.12278092465428309No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT4890.1031612923641657No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG4780.10084069069544212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)