FastQCFastQC Report
Wed 31 May 2023
EGAF00007936141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470348
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14970.31827497937697197No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14600.3104084635206273No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13920.2959510830278857No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9520.20240332689838164No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9520.20240332689838164No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8690.18475681835577062No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7880.16753552688647555No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6820.14499902200073136No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6420.1364946805344128No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6420.1364946805344128No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6370.135431637851123No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG6140.13054164150798983No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6060.12884077321472612No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6020.12799033906809426No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5800.12331295126161905No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5680.1207616488217235No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5640.11991121467509164No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4890.10396557442574435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)