FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470348
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT32180.6841742709653278No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15110.3212514988901834No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13710.2914863037580685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13540.28787195863488313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12490.2655480622857969No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10310.21919940129436077No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9320.19815115616522236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8840.18794594640564008No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA6790.14436119639075748No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6730.14308554517080968No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6510.13840815736433448No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6090.12947859882470003No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6030.12820294760475223No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5900.1254390366281987No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5830.12395077687159294No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5700.12118686589503941No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5390.11459600125864253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)