FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469263
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13620.2902423587625702No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12240.2608345426764948No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11300.24080313171931303No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGC5460.11635266364490701No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5300.11294306177985479No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5190.1105989604976314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)