FastQCFastQC Report
Sun 21 May 2023
EGAF00007936145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467493
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC9980.21347913230786342No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT9910.21198178368446158No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9620.20577848224465392No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9420.20150034332064864No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT7950.17005602222920985No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7710.16492225552040352No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7430.15893286102679613No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7060.15101830401738636No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7020.1501626762325853No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7000.14973486234018477No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6870.14695407203958133No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6400.13690044556816894No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6300.13476137610616631No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6180.13219449275176312No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6170.13198058580556285No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5920.12663291215055628No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCA5910.126419005204356No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5760.12321040101135204No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5760.12321040101135204No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5720.12235477322655099No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCA5710.12214086628035072No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5470.1170070995715444No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5400.11550975094814254No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5210.11144551897033753No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG4930.10545612447673014No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG4810.10288924112232696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)