FastQCFastQC Report
Wed 31 May 2023
EGAF00007936146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467493
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16890.36128883213224583No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14770.3159405595377899No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG12380.2648167993959268No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG11020.23572545471269088No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10150.2171155503932679No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9450.20214206415924943No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9340.19978908775104653No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG8090.17305071947601353No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7200.15401300126419007No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7190.15379909431798977No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7070.1512322109635866No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6810.14567063036237976No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6540.13989514281497262No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6410.1371143525143692No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC6380.1364726316757684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6220.13305012053656418No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC6200.13262230664416366No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6100.130483237182161No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5920.12663291215055628No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5790.12385212184995284No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5670.12128523849554967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5650.12085742460314915No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5480.11722100651774464No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5320.11379849537854042No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5210.11144551897033753No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5070.10845082172353383No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC5060.10823691477733356No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4910.10502831058432961No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4720.1009640786065246No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)