FastQCFastQC Report
Sun 21 May 2023
EGAF00007936148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452331
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20840.460724557901183No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16040.35460757719457653No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14980.3311734106218676No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG11990.26507137472337733No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG11240.2484905964879701No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT9950.2199716579230696No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9300.20560165011905002No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8780.1941056438758343No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7510.16602885939721132No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG7240.1600597792324647No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6720.14856377298924903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6660.14723731073041643No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6440.14237361578136365No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6160.13618345857347827No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6140.13574130448720073No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC6130.13552022744406197No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6050.13375161109895187No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5930.1310986865812867No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC5860.12955114727931535No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5790.12800360797734403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5730.12667714571851146No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5660.12512960641654008No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5550.12269775894201371No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4990.11031744452624295No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA4960.10965421339682667No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC4940.10921205931054914No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4790.10589590366346768No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA4760.10523267253405139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)