FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466501
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15010.321757080906579No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14620.31339697021013885No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11670.2501602354550151No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7740.16591604305242647No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6610.14169315821402312No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5820.1247585750084137No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5520.11832772062653671No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5500.11789899700107825No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5230.11211122805738895No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5090.10911016267917968No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4820.10332239373549038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)