FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466501
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28620.6135035080310652No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21200.4544470429859743No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14890.31918473915382817No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14040.30096398507184335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11010.2360123558148857No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10010.2145761745419624No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6820.14619475628133702No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5800.12432985138295524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)