FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459108
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18550.4040443642890126No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15500.337611193880307No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG13320.29012781306359287No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG11110.24199099122646522No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10950.23850597245092656No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA9900.21563553673645416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9550.20801205816496338No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9330.2032201573485977No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9310.20278453000165542No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG9150.19929951122611675No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG9080.19777481551181858No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8380.18252785836883695No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7630.16619183285849953No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC7540.16423150979725903No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5960.12981694938881483No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5800.1263319306132762No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5750.12524286224592035No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5630.12262909816426636No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4940.1075999546947559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)