FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458013
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14620.31920491339765467No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13640.2978081408169637No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12170.2657129819459273No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG12060.26331130339095177No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11040.2410411931539061No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10310.22510278092543223No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC9270.2023960018602092No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8940.19519096619528267No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8570.1871125928740014No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA8420.18383757666267114No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7640.16680749236375386No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG7630.1665891579496652No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA6370.1390790217744911No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCC6000.13100064845320986No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCG5530.12073893099104173No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5100.11135055118522838No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC4880.10654719407527734No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4710.10283550903576974No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4600.10043383048079421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)