FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458013
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG31040.6777100213312723No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22400.48906908755865003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13710.29933648171558447No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC12600.27510136175174066No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10600.23143447893400407No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG9690.2115660472519339No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9670.21112937842375654No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9220.20130432978976578No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9140.1995576544770563No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC8810.19235261881212978No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8210.1792525539668088No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC6560.14322737564217608No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGGAA6200.13536733673498352No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACCTG5840.1275072978277909No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5420.11833725243606623No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA5320.1161539082951794No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5010.10938554145843021No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4620.10087049930897157No Hit
ATCATCGAAATTCAGGACTACCCGTTCCCGACC4600.10043383048079421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)