FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537856
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13550.2519261661113755No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12630.23482121608757733No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10270.19094330080913852No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10240.19038553069966682No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8710.16193925511661114No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8070.15004015944788196No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGAC7390.1373973702998572No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7230.13442259638267492No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7190.13367890290337936No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6350.11806133983817231No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG6170.11471471918134221No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6110.11359917896239886No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG6070.1128554854831033No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5730.1065340909090909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)