FastQCFastQC Report
Wed 31 May 2023
EGAF00007936156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537856
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25090.46648173488814854No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21520.4001070918610186No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16280.30268324607329844No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12810.23816783674440742No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11170.2076764040932889No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9980.18555152308424558No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8240.15320085673488815No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGGGT7820.14539207520228462No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7170.13330705616373156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7060.13126189909566874No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6430.11954872679676345No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6090.11322733222275108No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG6070.1128554854831033No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT6030.1121117920038077No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5590.1039311637315564No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5430.1009563898143741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)