FastQCFastQC Report
Sun 21 May 2023
EGAF00007936157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415353
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16170.3893074083971947No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9460.22775807566094383No Hit
ACGATCGCCGAAGCGGCTGGATTTGGAAGTACCGGTGCCGA8020.19308877027492277No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT6930.1668460321702263No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5410.1302506542627596No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5340.1285653408064947No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5120.12326864137251928No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5040.12134256885107367No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC4790.11532359222155611No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC4670.11243448343938771No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4610.11098992904830349No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4340.10448943428842455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)