FastQCFastQC Report
Wed 31 May 2023
EGAF00007936158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415353
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16230.3907519627882789No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11810.28433645597840873No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9850.2371476792029912No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCGTG8150.19621863812227192No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC7170.17262424973456314No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC6680.16082705554070875No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6000.14445543910842104No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT5930.1427701256521561No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5150.12399091856806138No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5080.12230560511179649No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4990.12013877352517015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4620.11123068811348419No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4590.11050841091794208No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4430.10665626587505087No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4370.10521171148396664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)