FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472573
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8290.17542263311699993No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7390.15637795642154756No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6230.13183148423629787No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5340.11299841505968389No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5050.10686179701337147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)