FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472573
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9380.1984878526703811No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9240.19552534740664407No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8660.1832521113140192No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5970.12632968874650055No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5970.12632968874650055No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5750.12167432333205663No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5380.11384484513503733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)