FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463163
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11130.24030416937449667No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10700.23102018080027983No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9630.20791816272025185No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9470.20446365534379907No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9430.20360002849968586No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8880.19172515939312942No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7930.17121402184544102No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7850.1694867681572146No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6580.14206661585662067No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6480.13990754874633768No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6200.13386216083754532No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5770.12457817226332847No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5440.1174532507993946No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5380.1161578105332248No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4980.10752154209209286No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4970.10730563538106455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)