FastQCFastQC Report
Sun 21 May 2023
EGAF00007936166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463163
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23030.4972331554981724No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21120.4559949736917672No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11820.2552017324354493No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11130.24030416937449667No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10540.22756567342382705No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10480.22627023315765724No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9470.20446365534379907No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7060.15243013798597901No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6750.14573702994410176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6450.13925982861325278No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.12652133266258314No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5430.1172373440883663No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5360.11572599711116821No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4990.10773744880312114No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4980.10752154209209286No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4820.10406703471564006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)