FastQCFastQC Report
Sun 21 May 2023
EGAF00007936171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577711
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8220.14228567570982723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7730.13380392618454556No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7370.12757243673739985No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6940.12012926878664244No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGA6750.11684042713398222No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCG6670.11545565170128316No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA6340.1097434530413996No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6340.1097434530413996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)