FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563287
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8380.14876963253190645No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8000.14202351554358614No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCG7200.12782116398922752No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7010.12444810549506735No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7000.12427057610063785No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGA6040.10722775423540752No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6030.10705022484097805No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA5930.10527493089668322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)