FastQCFastQC Report
Sun 21 May 2023
EGAF00007936175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458264
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA11650.2542202747761116No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9500.2073040867273013No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9120.19901192325820924No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8110.1769722256166751No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7630.16649791386624302No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG7420.16191540247542902No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7320.15973325419408899No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7010.15296859452193495No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5480.11958172581743275No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5310.11587207373915472No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4730.10321561370738265No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG4710.10277918405111465No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC4610.10059703576977463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)