FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458264
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13230.2886982176212838No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11310.24680097061955553No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10490.22890735471256743No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9910.21625089468079536No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8220.1793725887261491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8130.1774086552729431No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7460.16278826178796502No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7280.15886039488155299No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG7280.15886039488155299No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6300.13747534172442086No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5640.12307316306757678No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4860.10605240647312467No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4840.10561597681685667No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG4640.10125168025417663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)