FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488055
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8770.17969286248476093No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6620.13564045035907837No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5650.11576564116749137No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5370.11002858284414666No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5320.1090041081435494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)