FastQCFastQC Report
Wed 31 May 2023
EGAF00007936179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469437
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14380.30632438431568026No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13750.29290405315303225No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12480.2658503696981704No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12440.264998285179907No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11160.23773158059547925No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10960.23347115800416243No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10100.21515134086150006No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9990.21280810843627582No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9960.21216904504757828No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9510.20258309421711537No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8090.17233409381876588No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7890.16807367122744904No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7650.16296116411786885No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7620.16232210072917133No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7100.15124500199174756No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7000.14911479069608916No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6820.145280410363904No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6670.14208509342041636No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6430.13697258631083617No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6410.1365465440517045No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6070.1293038256464659No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5080.10821473381944756No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5010.10672358591248667No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG4920.1048063957463941No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA4770.10161107880290646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)