FastQCFastQC Report
Wed 31 May 2023
EGAF00007936180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469437
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30410.6477972550097244No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22680.4831319218553288No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18440.392810962919412No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15680.33401713115923964No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14730.31378012385048476No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12440.264998285179907No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11310.24092689753896687No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10710.2281456297650164No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10690.2277195875058847No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9070.19321016451621836No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8710.18554140385184806No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8690.18511536159271638No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8280.1763814952805169No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8070.1719080515596342No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7950.1693517980048441No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7450.15870074152655203No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7290.15529240345349857No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC6930.14762364278912823No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6890.14677155827086488No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5910.12589548757341243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5580.11886579029773962No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5420.11545745222468616No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5320.11332724092902775No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5220.11119702963336933No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA4780.1018240999324723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)