FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503417
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18000.35755645915811346No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17550.3486175476791606No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11820.2347954081804945No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7670.15235878009681833No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7200.14302258366324538No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6780.13467959961622275No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6710.1332891022750523No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6020.11958277134065795No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5350.10627372536088373No Hit
GTCCAGGTGCATGGTGTCACGGATTTTCTGGTACACGGCAG5310.10547915545164348No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5210.10349273067854284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)