FastQCFastQC Report
Sun 21 May 2023
EGAF00007936182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503417
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG43300.8601219267525729No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23480.466412536724028No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15920.31623882387762037No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7850.15593434468839948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7380.1465981482548265No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7180.14262529870862525No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6970.13845380668511392No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6320.12554204565995983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5750.11421942445328626No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5500.10925336252053466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5450.10826015013398434No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCGAC5220.1036913731558529No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5190.10309544572392271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)