FastQCFastQC Report
Wed 31 May 2023
EGAF00007936183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500136
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10240.20474430954780298No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10190.20374458147383911No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9140.1827502919205976No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8510.1701537181886527No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG8090.16175600236735607No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8090.16175600236735607No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8040.1607562742933922No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7890.15775709007150054No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7290.14576035318393396No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6750.13496328998512405No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5060.10117248108514483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)