FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500136
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24660.4930658860789865No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT20190.4036901962666155No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18570.37129900667018567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10650.21294207975430685No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9890.19774621303005582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9810.1961466481117136No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8870.17735176032119265No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC7940.15875681814546444No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7890.15775709007150054No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG6700.13396356191116016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)