FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462623
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11340.24512399945528No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9790.2116193963551315No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8840.19108431703568565No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8100.17508857103948572No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7050.1523919044232561No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6430.13899006318319668No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6300.13617999969737776No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6040.13055987272573996No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5460.11802266640439406No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5360.11586107910761032No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5220.11283485689211302No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4910.10613393627208331No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4880.10548546008304818No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA4650.10051380930044551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)