FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461472
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11330.24551868802440885No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG10950.23728416892032453No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9570.20737986270022882No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9200.1993620414673046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9020.1954614797864226No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8190.17747555648013313No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8160.1768254628666528No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG8130.17617536925317245No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7900.17119131821648984No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6930.1501716247139588No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6550.1419371056098745No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6410.1389033354136329No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT6000.13001872269606823No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5640.12221759933430414No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5640.12221759933430414No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5620.12178420359198391No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5040.10921572706469732No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4930.10683205048193606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)