FastQCFastQC Report
Wed 31 May 2023
EGAF00007936188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461472
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22490.4873535122390958No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13930.30186013452603844No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12020.2604708411344567No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC11830.2563535815824145No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG11790.2554867900977741No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT11130.2411847306012066No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9040.1958948755287428No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8990.19481138617294225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8400.18202621177449552No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8330.18050932667637473No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA8140.17639206712433256No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG7130.15450558213716106No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7090.15363879065252062No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6590.14280389709451494No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6220.13478607586159072No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC6120.1326190971499896No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5420.11745024616878165No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5150.11159940364745856No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG4730.10249809305873378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)