FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461177
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9190.1992727304267125No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8450.18322683047940377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6580.14267840763958306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5770.12511465229185323No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5620.12186210500523659No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5380.11665802934664998No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT5230.11340548206003336No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4950.10733406045834896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4730.10256365777131123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)