FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499544
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG21020.4207837547843633No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA20690.41417773008984193No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13110.2624393446823503No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12910.25843569335233735No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10900.21819899748570698No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10850.21719808465320373No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7920.15854459266851367No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG7070.14152907451595856No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7050.14112870938295727No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6370.12751629486091315No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6120.12251173069839695No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5320.10649712537834505No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5290.10589657767884311No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5190.1038947520138366No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGG5000.1000912832503243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)