FastQCFastQC Report
Wed 31 May 2023
EGAF00007936196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499544
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG51141.023733645084317No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28160.5637141072658264No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24410.48864564482808315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15520.31068334320900665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14540.29106545169194303No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10880.21779863235270566No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG7150.14313053504796375No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7130.14273016991496246No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6840.13692487548644364No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5840.11690661883637878No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5790.11590570600387555No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5360.10729785564434764No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5230.1046954822798392No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5110.10229329148183143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)