FastQCFastQC Report
Sun 21 May 2023
EGAF00007936200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences577996
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG85701.4827092229011967No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12710.21989771555512494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11290.195330071488384No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8130.14065841286098865No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8030.1389282970816407No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6650.11505269932663893No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5910.10224984255946408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)