FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574659
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27640.48098089475671657No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24110.4195531610920563No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG16810.2925213039385096No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15110.2629385426835741No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15070.26224247771286974No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14810.25771805540329135No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13890.24170856107709093No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13060.22726521293497537No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11510.20029269532018118No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11300.1966383542239833No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10460.1820209898391916No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10310.1794107461990502No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10180.17714853504426104No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9880.1719280477639783No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9170.1595728945339758No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT8910.15504847222439744No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8430.14669569257594503No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG8150.1418232377810145No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8090.14077914032495795No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7610.13242636067650554No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7440.129468084551012No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6800.11833104501974213No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6640.11554678513692469No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6420.11171842779805066No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG6400.11137039531269849No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6400.11137039531269849No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6250.1087601516725571No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5900.10266958317889391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)