FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574659
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31800.5533716517099706No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30870.5371881411410941No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28900.502906941333904No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24010.41781299866529537No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17410.3029622784990751No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG17320.3013961323149903No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17280.30070006734428595No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG16610.28904097908498777No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15830.27546771215625265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12720.22134866068398823No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12510.2176943195877903No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11270.19611630549595502No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11250.19576827301060282No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10740.18689344463412214No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10620.18480524972200907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10420.18132492486848723No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9500.1653154305422868No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9210.16026895950468015No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8860.15417839101101696No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8860.15417839101101696No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8810.15330830979763652No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8680.15104609864284732No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8570.14913191997341033No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8330.1449555301491841No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8200.1426933189943949No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7380.12842398709495545No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6880.11972317496115087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6750.11746096380636167No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6420.11171842779805066No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC6340.11032629785664193No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6290.10945621664326148No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6200.10789007045917667No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6180.10754203797382449No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6080.10580187554706356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)