FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34130.6406778833789799No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27530.5167847093297192No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26800.5030813734121494No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19590.367737466609851No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17860.3352624376545145No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14770.2772579061678152No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12530.2352093137632176No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11090.20817807578883346No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10800.20273428480788114No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10740.20160798322561513No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10200.19147126898522104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10000.18771693037766768No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9670.18152227167520466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9380.1760784806942523No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9180.17232414208669894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8710.16350144635894856No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8610.16162427705517188No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8090.15186299667553316No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7860.1475455072768468No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7730.14510518718193713No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7610.1428525840174051No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7530.14135084857438376No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6820.12802294651756937No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6760.12689664493530337No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6740.12652121107454803No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6080.11413189366962197No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5710.10718636724564826No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5630.10568463180262691No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5520.10361974556847256No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5460.10249344398620655No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5430.10193029319507355No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5380.10099170854318523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)