FastQCFastQC Report
Sun 21 May 2023
EGAF00007936214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76991.4845910288202333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34220.6598610859362044No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26370.5084902640601319No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18570.3580835875463272No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18410.35499832238706963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13330.25704115358064306No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11330.2184753390899239No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10740.20709842381516175No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10170.1961071666853068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9790.18877966193207016No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9460.18241630254110153No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9440.18203064439619432No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9250.178366892019576No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9130.17605294315013287No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8880.171232216338793No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8390.16178359178856677No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8360.161205104571206No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7670.14789989857190788No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7570.14597160784737193No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7350.14172936825339283No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7250.13980107752885687No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7110.13710147051450652No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6960.1342090344277026No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6650.12823133318164115No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6540.1261102133846516No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5780.11145520387817831No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5590.10779145150156No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5450.10509184448720965No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5390.10393487005248808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)