FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546687
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80721.4765304461236501No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21850.3996802557953637No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12940.2366985130431124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7790.1424946998922601No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6320.11560545613852169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)